Fri Jul 18 01:34:55 PM CEST 2025
bcn2082
Using slurm
ERROR: Unable to locate a modulefile for 'java/11'
java version "11.0.26" 2025-01-21 LTS
Java(TM) SE Runtime Environment 18.9 (build 11.0.26+7-LTS-187)
Java HotSpot(TM) 64-Bit Server VM 18.9 (build 11.0.26+7-LTS-187, mixed mode)
***
cmd: matsim-episim-*.jar 
***
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
2025-07-18T13:34:57,223  INFO RunEpisim:227 Using default OpenBerlinScenario
2025-07-18T13:34:57,226  INFO RunEpisim:231 Starting with modules: [org.matsim.run.modules.OpenBerlinScenario@6d304f9d]
WARNING: An illegal reflective access operation has occurred
WARNING: Illegal reflective access by com.google.inject.internal.cglib.core.$ReflectUtils$1 (file:/scratch/projects/bzz0020/runs/jakob/2025-07-18/1-timecheck/1c-both/matsim-episim-vsp-2025.1.jar) to method java.lang.ClassLoader.defineClass(java.lang.String,byte[],int,int,java.security.ProtectionDomain)
WARNING: Please consider reporting this to the maintainers of com.google.inject.internal.cglib.core.$ReflectUtils$1
WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
WARNING: All illegal access operations will be denied in a future release
2025-07-18T13:34:57,451  INFO RunEpisim:174 Defined Bindings: 
		com.google.inject.Stage <---- { ConstantFactory{value=DEVELOPMENT} }
		com.google.inject.Injector <---- { Provider<Injector> }
		java.util.logging.Logger <---- { Provider<Logger> }
		org.matsim.core.config.Config <---- { @Provides org.matsim.run.modules.OpenBerlinScenario.config(OpenBerlinScenario.java:69)[Scopes.SINGLETON] }
		org.matsim.episim.model.ContactModel <---- { org.matsim.episim.model.DefaultContactModel from org.matsim.episim.EpisimModule.configure(EpisimModule.java:64)[Scopes.SINGLETON] }
		org.matsim.episim.model.InfectionModel <---- { org.matsim.episim.model.DefaultInfectionModel from org.matsim.episim.EpisimModule.configure(EpisimModule.java:65)[Scopes.SINGLETON] }
		org.matsim.episim.model.ProgressionModel <---- { org.matsim.episim.model.ConfigurableProgressionModel from org.matsim.episim.EpisimModule.configure(EpisimModule.java:66)[Scopes.SINGLETON] }
		org.matsim.episim.model.AntibodyModel <---- { org.matsim.episim.model.DefaultAntibodyModel from org.matsim.episim.EpisimModule.configure(EpisimModule.java:67)[Scopes.SINGLETON] }
		org.matsim.episim.model.progression.DiseaseStatusTransitionModel <---- { org.matsim.episim.model.progression.DefaultDiseaseStatusTransitionModel from org.matsim.episim.EpisimModule.configure(EpisimModule.java:68)[Scopes.SINGLETON] }
		org.matsim.episim.model.FaceMaskModel <---- { org.matsim.episim.model.DefaultFaceMaskModel from org.matsim.episim.EpisimModule.configure(EpisimModule.java:69)[Scopes.SINGLETON] }
		org.matsim.episim.policy.ShutdownPolicy <---- { org.matsim.episim.policy.FixedPolicy from org.matsim.episim.EpisimModule.configure(EpisimModule.java:70)[Scopes.SINGLETON] }
		org.matsim.episim.model.InitialInfectionHandler <---- { org.matsim.episim.model.RandomInitialInfections from org.matsim.episim.EpisimModule.configure(EpisimModule.java:71)[Scopes.SINGLETON] }
		org.matsim.episim.model.vaccination.VaccinationModel <---- { org.matsim.episim.model.vaccination.RandomVaccination from org.matsim.episim.EpisimModule.configure(EpisimModule.java:72)[Scopes.SINGLETON] }
		org.matsim.episim.model.testing.TestingModel <---- { org.matsim.episim.model.testing.DefaultTestingModel from org.matsim.episim.EpisimModule.configure(EpisimModule.java:73)[Scopes.SINGLETON] }
		org.matsim.episim.model.activity.ActivityParticipationModel <---- { org.matsim.episim.model.activity.AllParticipationModel from org.matsim.episim.EpisimModule.configure(EpisimModule.java:74)[Scopes.SINGLETON] }
		org.matsim.episim.model.AntibodyModel$Config <---- { ConstantFactory{value=org.matsim.episim.model.AntibodyModel$Config@49b07ee3}[Scopes.SINGLETON] }
		java.util.Set<org.matsim.episim.model.SimulationListener> <---- { com.google.inject.internal.RealMultibinder$RealMultibinderProvider@12264893 }
		java.util.Collection<com.google.inject.Provider<org.matsim.episim.model.SimulationListener>> <---- { com.google.inject.internal.RealMultibinder$RealMultibinderCollectionOfProvidersProvider@12264893 }
		java.util.Collection<javax.inject.Provider<org.matsim.episim.model.SimulationListener>> <---- { com.google.inject.internal.RealMultibinder$RealMultibinderCollectionOfProvidersProvider@12264893 }
		java.util.Set<org.matsim.episim.model.vaccination.VaccinationModel> <---- { com.google.inject.internal.RealMultibinder$RealMultibinderProvider@1ad7b09a }
		java.util.Collection<com.google.inject.Provider<org.matsim.episim.model.vaccination.VaccinationModel>> <---- { com.google.inject.internal.RealMultibinder$RealMultibinderCollectionOfProvidersProvider@1ad7b09a }
		java.util.Collection<javax.inject.Provider<org.matsim.episim.model.vaccination.VaccinationModel>> <---- { com.google.inject.internal.RealMultibinder$RealMultibinderCollectionOfProvidersProvider@1ad7b09a }
		java.util.concurrent.ExecutorService <---- { @Provides org.matsim.episim.EpisimModule.executorService(EpisimModule.java:172)[Scopes.SINGLETON] }
		org.matsim.api.core.v01.Scenario <---- { @Provides org.matsim.episim.EpisimModule.scenario(EpisimModule.java:94)[Scopes.SINGLETON] }
		org.matsim.episim.EpisimConfigGroup <---- { @Provides org.matsim.episim.EpisimModule.episimConfigGroup(EpisimModule.java:108)[Scopes.SINGLETON] }
		org.matsim.episim.TracingConfigGroup <---- { @Provides org.matsim.episim.EpisimModule.tracingConfigGroup(EpisimModule.java:114)[Scopes.SINGLETON] }
		org.matsim.episim.VaccinationConfigGroup <---- { @Provides org.matsim.episim.EpisimModule.vaccinationConfigGroup(EpisimModule.java:120)[Scopes.SINGLETON] }
		org.matsim.episim.TestingConfigGroup <---- { @Provides org.matsim.episim.EpisimModule.testingConfigGroup(EpisimModule.java:126)[Scopes.SINGLETON] }
		org.matsim.episim.VirusStrainConfigGroup <---- { @Provides org.matsim.episim.EpisimModule.strainConfigGroup(EpisimModule.java:132)[Scopes.SINGLETON] }
		org.matsim.episim.reporting.EpisimWriter <---- { @Provides org.matsim.episim.EpisimModule.episimWriter(EpisimModule.java:145)[Scopes.SINGLETON] }
		org.matsim.core.api.experimental.events.EventsManager <---- { @Provides org.matsim.episim.EpisimModule.eventsManager(EpisimModule.java:151)[Scopes.SINGLETON] }
		java.util.SplittableRandom <---- { @Provides org.matsim.episim.EpisimModule.splittableRandom(EpisimModule.java:157)[Scopes.SINGLETON] }
		com.typesafe.config.Config <---- { @Provides org.matsim.episim.EpisimModule.policyConfig(EpisimModule.java:164)[Scopes.SINGLETON] }
		org.matsim.episim.EpisimRunner <---- { constructor from org.matsim.episim.EpisimModule.configure(EpisimModule.java:77)[Scopes.SINGLETON] }
		org.matsim.episim.ReplayHandler <---- { constructor from org.matsim.episim.EpisimModule.configure(EpisimModule.java:78)[Scopes.SINGLETON] }
		org.matsim.episim.InfectionEventHandler <---- { constructor from org.matsim.episim.EpisimModule.configure(EpisimModule.java:79)[Scopes.SINGLETON] }
		org.matsim.episim.EpisimReporting <---- { constructor from org.matsim.episim.EpisimModule.configure(EpisimModule.java:80)[Scopes.SINGLETON] }
2025-07-18T13:34:57,519  INFO Version:21 HV000001: Hibernate Validator null
2025-07-18T13:34:57,670  INFO ScenarioLoaderImpl:134 loading network from https://svn.vsp.tu-berlin.de/repos/public-svn/matsim/scenarios/countries/de/berlin/berlin-v5.4-10pct/input/berlin-v5-network.xml.gz
2025-07-18T13:34:57,673  INFO MatsimXmlParser:160 starting to parse xml from url https://svn.vsp.tu-berlin.de/repos/public-svn/matsim/scenarios/countries/de/berlin/berlin-v5.4-10pct/input/berlin-v5-network.xml.gz ...
com.google.inject.ProvisionException: Unable to provision, see the following errors:

1) Error in custom provider, java.lang.RuntimeException: java.net.ConnectException: Connection timed out (Connection timed out)
  at org.matsim.episim.EpisimModule.scenario(EpisimModule.java:94) (via modules: com.google.inject.util.Modules$OverrideModule -> org.matsim.episim.EpisimModule)
  while locating org.matsim.api.core.v01.Scenario
    for the 2nd parameter of org.matsim.episim.ReplayHandler.<init>(ReplayHandler.java:63)
  at org.matsim.episim.EpisimModule.configure(EpisimModule.java:78) (via modules: com.google.inject.util.Modules$OverrideModule -> org.matsim.episim.EpisimModule)
  while locating org.matsim.episim.ReplayHandler

1 error
	at com.google.inject.internal.InternalProvisionException.toProvisionException(InternalProvisionException.java:226)
	at com.google.inject.internal.InjectorImpl$1.get(InjectorImpl.java:1053)
	at org.matsim.episim.EpisimRunner.run(EpisimRunner.java:84)
	at org.matsim.run.RunEpisim.call(RunEpisim.java:255)
	at org.matsim.run.RunEpisim.call(RunEpisim.java:63)
	at picocli.CommandLine.executeUserObject(CommandLine.java:1853)
	at picocli.CommandLine.access$1100(CommandLine.java:145)
	at picocli.CommandLine$RunLast.executeUserObjectOfLastSubcommandWithSameParent(CommandLine.java:2255)
	at picocli.CommandLine$RunLast.handle(CommandLine.java:2249)
	at picocli.CommandLine$RunLast.handle(CommandLine.java:2213)
	at picocli.CommandLine$AbstractParseResultHandler.execute(CommandLine.java:2080)
	at picocli.CommandLine.execute(CommandLine.java:1978)
	at org.matsim.run.RunEpisim.main(RunEpisim.java:120)
Caused by: java.lang.RuntimeException: java.net.ConnectException: Connection timed out (Connection timed out)
	at org.matsim.core.utils.io.MatsimXmlParser.parse(MatsimXmlParser.java:166)
	at org.matsim.core.scenario.ScenarioLoaderImpl.loadNetwork(ScenarioLoaderImpl.java:143)
	at org.matsim.core.scenario.ScenarioLoaderImpl.loadScenario(ScenarioLoaderImpl.java:113)
	at org.matsim.core.scenario.ScenarioUtils.loadScenario(ScenarioUtils.java:79)
	at org.matsim.episim.EpisimModule.scenario(EpisimModule.java:102)
	at org.matsim.episim.EpisimModule$$FastClassByGuice$$8e14f40d.invoke(<generated>)
	at com.google.inject.internal.ProviderMethod$FastClassProviderMethod.doProvision(ProviderMethod.java:264)
	at com.google.inject.internal.ProviderMethod.doProvision(ProviderMethod.java:173)
	at com.google.inject.internal.InternalProviderInstanceBindingImpl$CyclicFactory.provision(InternalProviderInstanceBindingImpl.java:185)
	at com.google.inject.internal.InternalProviderInstanceBindingImpl$CyclicFactory.get(InternalProviderInstanceBindingImpl.java:162)
	at com.google.inject.internal.ProviderToInternalFactoryAdapter.get(ProviderToInternalFactoryAdapter.java:40)
	at com.google.inject.internal.SingletonScope$1.get(SingletonScope.java:168)
	at com.google.inject.internal.InternalFactoryToProviderAdapter.get(InternalFactoryToProviderAdapter.java:39)
	at com.google.inject.internal.SingleParameterInjector.inject(SingleParameterInjector.java:42)
	at com.google.inject.internal.SingleParameterInjector.getAll(SingleParameterInjector.java:65)
	at com.google.inject.internal.ConstructorInjector.provision(ConstructorInjector.java:113)
	at com.google.inject.internal.ConstructorInjector.construct(ConstructorInjector.java:91)
	at com.google.inject.internal.ConstructorBindingImpl$Factory.get(ConstructorBindingImpl.java:306)
	at com.google.inject.internal.ProviderToInternalFactoryAdapter.get(ProviderToInternalFactoryAdapter.java:40)
	at com.google.inject.internal.SingletonScope$1.get(SingletonScope.java:168)
	at com.google.inject.internal.InternalFactoryToProviderAdapter.get(InternalFactoryToProviderAdapter.java:39)
	at com.google.inject.internal.InjectorImpl$1.get(InjectorImpl.java:1050)
	... 11 more
Caused by: java.net.ConnectException: Connection timed out (Connection timed out)
	at java.base/java.net.PlainSocketImpl.socketConnect(Native Method)
	at java.base/java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:412)
	at java.base/java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:255)
	at java.base/java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:237)
	at java.base/java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
	at java.base/java.net.Socket.connect(Socket.java:608)
	at java.base/sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:302)
	at java.base/sun.security.ssl.BaseSSLSocketImpl.connect(BaseSSLSocketImpl.java:173)
	at java.base/sun.net.NetworkClient.doConnect(NetworkClient.java:182)
	at java.base/sun.net.www.http.HttpClient.openServer(HttpClient.java:510)
	at java.base/sun.net.www.http.HttpClient.openServer(HttpClient.java:605)
	at java.base/sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:265)
	at java.base/sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:372)
	at java.base/sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:207)
	at java.base/sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1202)
	at java.base/sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1096)
	at java.base/sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:193)
	at java.base/sun.net.www.protocol.http.HttpURLConnection.getInputStream0(HttpURLConnection.java:1629)
	at java.base/sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1557)
	at java.base/sun.net.www.protocol.https.HttpsURLConnectionImpl.getInputStream(HttpsURLConnectionImpl.java:250)
	at java.base/java.net.URL.openStream(URL.java:1165)
	at org.matsim.core.utils.io.MatsimXmlParser.parse(MatsimXmlParser.java:164)
	... 32 more
Filtering output...
  adding: calibration1.strains.tsv (deflated 96%)
  adding: calibration1.outdoorFraction.tsv (deflated 74%)
  adding: calibration1.diseaseImport.tsv (deflated 83%)
  adding: calibration1.config.xml (deflated 79%)
  adding: calibration1.infections.txt.csv (deflated 66%)
  adding: calibration1.vaccinationsDetailed.tsv (deflated 79%)
  adding: calibration1.restrictions.txt.csv (deflated 98%)
  adding: calibration1.vaccinations.tsv (deflated 88%)
Creating zip file...
  adding: _info.txt (deflated 34%)
  adding: metadata.yaml (deflated 46%)
  adding: summaries/ (stored 0%)
  adding: summaries/calibration1.zip (stored 0%)
Aggregating seeds...
ERROR: Unable to locate a modulefile for 'anaconda3/2019.10'
WARN: day is not integer in run: 0, file: strains.tsv
WARN: day is not integer in run: 0, file: outdoorFraction.tsv
WARN: day is not integer in run: 0, file: diseaseImport.tsv
WARN: day is not integer in run: 0, file: infections.txt.csv
WARN: day is not integer in run: 0, file: restrictions.txt.csv
WARN: day is not integer in run: 0, file: vaccinations.tsv